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Patrick Granvold (Unlicensed)

Patrick Granvold (Unlicensed)

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  • Authenticate "viewer.user" with "viewer.password"
  • Retrieve SNOMEDCT/latest metadata

  • Test Each Type of Metadata

    • Description FormatsAttribute Descriptions

      • TEST: Expect 1 99
      • TEST:   Expect 

        SCTID: 900000000000538005Description format reference set 900000000000461009

        Concept type component (foundation metadata concept)
        Description format
        Description format reference set

      Modules

      • Concept type component

    • Attribute Types

      • TEST: Expect 619
        • NOTE:  In current SNOMEDCT data (as of 3/1/15),  707000009, SNOMED CT parsable string (foundation metadata concept) exists, not in test data
      • TEST: ExpectExpect 

        SCTID: 900000000000012004SNOMED CT model component module (core 447638001

        Map source concept cannot be classified with available data (foundation metadata concept)
        SNOMED CT model component
        SNOMED CT model component moduleMap source concept cannot be classified with available data

    • Attribute Value Refsets

      • TEST: Expect 5
      • TEST: Expect

        SCTID: 900000000000489007

        Concept inactivation indicator attribute value reference set (foundation metadata concept)
        Concept inactivation indicator attribute value reference set
        Concept inactivation indicator reference set

    • Relationship ModifiersCase Significances

      • TEST: Expect 2 Expect 3
      • TEST: Expect

        SCTID: 900000000000451002Existential restriction modifier 900000000000020002

        Only initial character case insensitive (core metadata concept)
        Existential restriction modifier
        Some

      Module Dependency Refsets

      • Initial character case insensitive
        Only initial character case insensitive

    • Characteristic Types

      • TEST: Expect 15
      • TEST: Expect Expect 

        SCTIDCTID: 900000000000534007Module dependency reference set (foundation 900000000000011006

        Inferred relationship (core metadata concept)
        Module dependency
        Module dependency reference set

      Modules

      • Inferred relationship

    • Complex Map Refsets

      • TEST: Expect 63
      • TEST: Expect 

        SCTID: 900000000000207008SNOMED CT core module (core 447563008

        ICD-9-CM equivalence complex map reference set (foundation metadata concept)
        SNOMED CT core
        SNOMED CT core moduleICD-9-CM equivalence complex map reference set

    • Definition Statuses

      • TEST: Expect 2
      • TEST: Expect 

        SCTID: 900000000000073002

        Sufficiently defined concept definition status (core metadata concept)
        Defined
        Necessary and sufficient definition
        Sufficiently defined concept definition status

    • Complex Map RefsetsDescription Formats
      • TEST:   Expect 34
      • TEST: Expect  Expect

        SCTID: 447563008ICD-9-CM equivalence complex map reference set 900000000000541001

        Limited HyperText Markup Language (foundation metadata concept)
        ICD-9-CM equivalence complex map reference set

      Attribute Descriptions


      • Limited HTML
        Limited HyperText Markup Language

    • Description Types
      • TEST: Expect 43
      • TEST: Expect 

        900000000000550004

        Definition (core metadata concept)
        Definition

    • Hierarchical Relationship Types
      • TEST: Expect 1
      • TEST: Expect

        SCTID: 900000000000461009Concept type component (foundation metadata concept)
        Concept type component: 116680003

        Is a (attribute)
        Is a

      • TEST: All hierarchical relationship types must be relationship types
    • Inferred Characteristic Type
      • TEST: Expect 1
      • TEST: Expect

        900000000000011006

        Inferred relationship (core metadata concept)
        Inferred relationship

      • TEST: All inferred characteristic types must be characteristic types

    • Language Refsets

      • TEST: Expect  Expect 4
      • TEST: Expect 

        SCTID: 900000000000507009

        English [International Organization for Standardization 639-1 code en] language reference set (foundation metadata concept)
        English
        English [International Organization for Standardization 639-1 code en] language reference set

    • Non-grouping Relationship Types

      • see file
    • Hierarchical Relationship TypesTEST: Expect 1

      Map Relations (Reference Set Attribute)

      • TEST: Expect 14 (6 from Reference Set Attribute
        • 8 from 447634004:  ICD-10 map category value (foundation metadata concept)
        • 6 from 447247004: SNOMED CT source code to target map code correlation value (foundation metadata concept)
      • TEST: ExpectExpect 

        SCTID: 116680003

        Is a (attribute)
        Is a

      Case Significances

      • TEST: Expect 3

        447559001

        Broad to narrow map from SNOMED CT source code to target code (foundation metadata concept)
        Broad to narrow map from SNOMED CT source code to target code

    • Modules
      • TEST: Expect 6
      • TEST: Expect

        SCTID: 900000000000020002Only initial character case insensitive 900000000000012004

        SNOMED CT model component module (core metadata concept)
        Initial character case insensitive
        Only initial character case insensitive

      Simple Map

      • SNOMED CT model component
        SNOMED CT model component module

    • Module Dependency Refsets

      • TEST:

        Expect 4

         Expect 1

      • TEST:

         Expect 

        Expect

        SCTID: 446608001ICD-O simple map 900000000000534007

        Module dependency reference set (foundation metadata concept)
        ICD-O simple map
        Module dependency
        Module dependency reference set

    • Attribute Non-grouping Relationship Types

      • TEST: Expect 8: Expect 4
        • These are hardcoded in SnomedMetadataServiceJpaHelper.getNonGroupingRelationshipTypes()
        • Concepts are:  "123005000", "272741003", "127489000", "411116001"
      • TEST: Expect  Expect

        SCTID: 447638001

        Map source concept cannot be classified with available data (foundation metadata concept)
        Map source concept cannot be classified with available data

      Simple

      •  272741003

         

        Laterality (attribute)
        Laterality

      • TEST: All non-grouping relationship types must be relationship types
    • Refset Descriptor Refsets
      • TEST: Expect 231
      • TEST: Expect 

        SCTID: 447565001Virtual therapeutic moiety simple 900000000000456007

        Reference set descriptor reference set (foundation metadata concept)
        Virtual therapeutic moiety simple Reference set descriptor
        Reference set descriptor reference set

    • Relationship Characteristic TypesModifiers

      • TEST: Expect 52
      • TEST: Expect Expect

        CTIDSCTID: 900000000000011006Inferred relationship 900000000000451002

        Existential restriction modifier (core metadata concept)
        Inferred relationship
        Existential restriction modifier
        Some

    • Relationship Types

      • see file
      Refset Descriptor Refsets

      • TEST:  Expect 1Expect 63 (62 + "Is a" relationship)
      • TEST: Expect Expect

        SCTID: 900000000000456007

        Reference set descriptor reference set (foundation metadata concept)
        Reference set descriptor
        Reference set descriptor reference set

      Map Relations (Reference Set Attribute)

      • 260507000

        Access (attribute)
        Access

    • Simple Map Refsets

      • TEST: Expect 14 (6 from Reference Set Attribute8 from 447634004:  ICD-10 map category value 3
        • NOTE: Current SNOMEDCT (as of 3/1/2015) also includes 467614008, GMDN simple map reference set (foundation metadata concept)6 from 447247004: SNOMED CT source code to target map code correlation value
      • TEST: Expect 

        SCTID: 446608001

        ICD-O simple map reference set (foundation metadata concept)
        ICD-O simple map reference set

    • Simple Refsets

      • TEST: Expect 23
      • TEST: Expect 

        SCTID: 447559001Broad to narrow map from SNOMED CT source code to target code 447565001

        Virtual therapeutic moiety simple reference set (foundation metadata concept)
        Broad to narrow map from SNOMED CT source code to target code

      Description Formats

      • Virtual therapeutic moiety simple reference set

    • Stated Characteristic Types
      • TEST: Expect 41
      • TEST: Expect

        SCTID: 900000000000541001Limited HyperText Markup Language (foundation 900000000000010007

        Stated relationship (core metadata concept)
        Limited HTML
        Limited HyperText Markup Language

     

      • Stated relationship

      • TEST: All stated characteristic types must be characteristic types

Procedure 2:  ICD9CM/ClaML loader test

The ClamL loader test is simpler, as the full data is loaded instead of a truncated portion.  Concept names are not checked.

  • Retrieve ICD9CM/2013 metadataTEST: ?
  • Authenticate "viewer.user" with "viewer.password"
  • Retrieve SNOMEDCT/latest metadata

  • Test Each Type of Metadata

    • Case Significances:
      • TEST: Expect 1
    • Characteristic Types:
      • TEST: Expect 1
    • Definition Statuses
      • TEST: Expect 1
    • Description Types
      • TEST: Expect 13
    • Hierarchical Relationship Types
      • TEST: Expect 1
      • TEST: All hierarchical relationship types must be relationship types
    • Inferred Characteristic Types
      • TEST: Expect 1
      • TEST: All inferred characteristic types must be characteristic types
    • Modules:
      • TEST: Expect 1
    • Relationship Modifiers
      • TEST: Expect 1
    • Relationship Types
      • TEST: Expect 4
    • Simple Refset Types
      • TEST: Expect 2
    • Stated Characteristic Types
      • TEST: Expect 1
      • TEST: All stated characteristic types must be characteristic types
    • All other metadata keys in MetadataKeys
      • TEST: Expect 0

Expected Runtime

  • < 3s10s

Notes

  • If sample data for either SNOMEDCT or ICD9CM is updated, this test will need to be revised with the correct versionexpected numbers and concepts.