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- Create a separate working dir, e.g. c:/ncifull
- Create config/config.properties file for this work -e.g. config.properties
- set all directories to c:/ncifull instead of c:/umlsserver
- Set up a second "server" in Eclipse to run with this config file.
- Set up secondary run configurations that use this config.properties file
- Create config/config.properties file for this work -e.g. config.properties
- Truncate your db (or prepare a fresh db)
- Make sure you are using collation utf8_bin
- ALTER DATABASE ncifulldb DEFAULT CHARACTER SET utf8 COLLATE utf_bin
- Pull and build the project and make sure your config file is completely up to date
- Clear your indexes directory of all files
- Download the data from https://wci1.s3.amazonaws.com/NCI/umls.sql.gz
- Data including the NCI scale insertion is at: https://wci1.s3.amazonaws.com/NCI/umls-with-nci.sql.gz
- gunzip the file (may require cygwin)
- Try "gunzip umls.sql.gz"
- Due to the file size being so large, gzip can have some checksum issues, so do this:
- "cat umls.sql.gz | gunzip -c > umls.sql"
- Import the file into your database (with MySQL workbench → see the Management/Data Import tool)
- Reindex your database (run the Reindex profile on the admin/lucene project)
- NOTE: make sure your indexed.objects property is blank.
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