Versions Compared

Version Old Version 3 New Version 4
Changes made by

jo (Unlicensed)

jo (Unlicensed)

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

  • nci_merge: Merged SCUI current version NCI atoms

    Code Block
    select a.id clusterId, a.id conceptId 
from concepts a, concepts_atoms b, atoms c
where a.terminology = :terminology
  and a.id = b.concepts_id and b.atoms_id = c.id
  and c.terminology='NCI'
group by a.id having count(distinct c.conceptId)>1

  • nci_sub_split: Split SCUI current version NCI (or sub-source) atoms

    Code Block
    TBD: 
select a.id clusterId, a.id conceptId 
from concepts a, concepts_atoms b, atoms c
where a.terminology = :terminology
  and a.id = b.concepts_id and b.atoms_id = c.id 
  and c.terminology in (select terminology from root_terminologies where family = 'NCI' and terminology != 'NCI')
group by a.id having count(distinct c.conceptId)>1

  • sct_sepfnpt: SNOMED concept clusters where the FN and PT terms are separated

  • cdsty_coc: Find concepts with Clinical Drug STY and any other STY
     

  • multsty:concepts with more than 3 STYs|
     

  • styisa:One STY is an ancestor of another in the STY isa hierarchy
     

  • sfo_lfo: Short form in one concept, long form in another
     

  • deleted_cui: CUIs that are going away - will need bequeathal rel

NON-required bins

  • rxnorm_merge: RXCUI Merges
    • Same as nci_merge but with RXNORM
     cbo

  •  cbo_merge: Merged SCUI current version CBO atoms
    • Same as nci_merge but with CBO
  • sct_sepfnpt: SNOMED concept clusters where the FN and PT terms are separated

  • rxnorm_split: RXCUI splits

    Code Block
    see split query above



  • nci_pdq_merge: Concepts containing current version NCI and current version PDQ atoms

  • nci_sct_merge: Concepts containing current version NCI and current version SNOMEDCT atoms

  • ambig_no_ncimth_pn: Ambiguous concepts where at least one has no PN (sepstring)

  • ambig_no_mth_pn: Ambiguous concepts where at least one has no PN (sepstring)

  • ambig_no_rel: Ambiguous concepts where at least one pair lacks an approved REL

  • pn_pn_ambig: Identical (same SUI) PN's in multiple concepts

  • multiple_pn: Concepts with multiple MTH/PN atoms

  • pn_no_ambig: Concept has MTH/PN atom but no ambiguous string

  • ambig_pn: MTH/PN atom is ambiguous but has no matching ambiguous string

  • pn_orphan
    cdsty_coc: MTH/PNs on their own

  • nosty
    multsty
    styisa

  • cbo_chem: Current version CBO concepts with CHEM STYs

  • go_chem: Current version GO concepts with CHEM STYs

  • mdr_chem: Current version MDR concepts with CHEM STYs

  • true_orphan

  • sfo_lfo

  • deleted_cui_split

...